2017-
1. 杨群，2017. 2016年古生物学热点回眸。科技导报，35（1）：86-95（A sample of hot research topics in paleontology in 2016. Science & Technology Review）
2. 吴浩若，许波，杨群*，2017. 西藏南部早白垩世贝里阿斯期放射虫化石组合。微体古生物学报，34（4）: 343-359【Berriasian (earliest Cretaceous) radiolarian assemblage from the southern Xizang (Tibet). Acta Micropalaeontologia Sinica】
3. Su Chengyong, Shi Qinghui, Sun Xiaoyan, Ma Junye, Li Chuxiang, Hao Jiasheng*, Yang Qun*, 2017. Dated phylogeny and dispersal history of the butterfly subfamily Nymphalinae (Lepidoptera: Nymphalidae). Scientific Reports, 7: 8799 | DOI:10.1038/s41598-017-08993-w. (通讯作者)
4. Yang Qun, Reitner J., Wang Yongdong, Reich M., (editors) 2017. Critical Intervals in Earth History: Palaeobiological Innovations. Abstract Volume of the 2nd Joint Conference of the Palaeontological Society of China and the Pal？ontologische Gesellschaft. Univ. Sci. Tech. China Press, Hefei. 552 p.
5. 蔡华伟，杨群*，2018. 2017年古生物学热点回眸。科技导报，36（1）：163-175
6. Su Chengyong, Yunliang Wang, Xiaoyan Sun, Ruisong Tao, Hongchun Pan, Jiasheng Hao*，Qun Yang*, submisted. Diversification pattern and molecular high-altitude adaptation of the Parnassius butterflies (Lepidoptera: Papilionidae) revealed by comparative transcriptomics analysis.
7. 王运良, 潘忠琪, 陈可可, 陶瑞松, 苏成勇, 郝家胜*, 杨 群*. (2019). 基于线粒体基因组控制区序列的中国冰清绢蝶遗传分化和谱系生物地理研究. 昆虫学报Acta Entolologica Sinica 62(2): 475-488.
8. Li, G., Matsuoka, A, Yang, Q., Sha, J. (2019). Middle and Late Jurassic Radiolarians from Nadanhada Terrane of Eastern Heilongjiang Province, Northeastern China. Paleontological Research 23(4): 291-313.
9. Li, C. Moran, R.C, Ma, J.Y., Wang, B., Hao J.S., Yang, Q. (2020). A mid-Cretaceous tree fern of Thyrsopteridaceae (Cyatheales) preserved in Myanmar amber." Cretaceous Research, 105, 104050. https://doi.org/10.1016/j.cretres.2019.01.0020.
10. Tao Ruisong Xu Chang, Wang Yunliang, Sun Xiaoyan, Li Chunxiang, Ma Junye, Hao Jiangsheng*, Yang Qun*. (2020) Spatiotemporal differentiation of alpine butterfly Parnassius glacialis (Papilionidae: Parnassiinae) in China: evidence from mitochondrial DNA and nuclear single nucleotide polymorphisms. Genes, 11, 188; doi:10.3390/genes11020188
11. Noah, K., Hao, J., Li, L., Sun, X., Foley, B., Yang, Q*., Xia, X.*, 2020. Major revisions in arthropod phylogeny through improved supermatrix, with support for two waves of land invasion by chelicerates. Evolutionary Bioinformatics, 16: 1-12 . https://doi.org/10.1177/ 11769343209037
2014-2016
1. Reitner J, Yang Qun, Wang Yongdong, Reich M., 2016. Preface: special issue ‘‘Palaeobiology and Fossil Lagerst？tten: a tribute and memorial to Adolf Seilacher’’. Pal？ontologische Zeitschrift, 90:189.
2. Reitner J., Reich M., Yang Qun, Wang Yongdong, 2016. Preface: special issue ‘‘Palaeobiology and Fossil Lagerst？tten: a tribute and memorial to Adolf Seilacher’’. Pal？ontologische Zeitschrift, 90: 191-192.
3. Cao Y., Hao J.S., Sun X.Y., Zheng B., Yang Q.* 2016. Molecular phylogenetic and dating analysis of pierid butterfly species using complete mitochondrial genomes. Genetics and Molecular Research 15 (4): gmr15049196
4. Yang Qun, Wang Yongdong, Reich M., Reitner J., 2016. Editorial - Systematics and biodiversity of fossil Lagerst？tten. Palaeoworld, 25:135-137.
5. W？rheide G*., Dohrmann M., Yang Qun*, 2016. Molecular paleobiology – progress and perspectives. Palaeoworld, 25: 138-148.
6. Ma Junye, Yang Qun*. 2016. Early Divergence Dates of Demosponges Based on Mitogenomics and Evaluated Fossil Calibrations. Palaeoworld, 25:.209-302.
7. Sun Xiaoyan, Xia Xuhua, Yang Qun*, 2016. Dating the origin of the major lineages of Branchiopoda. Palaeoworld, 25: 303-317
8. Reitner J, Yang Qun, Wang Yongdong, Reich M., 2016. Preface: special issue ‘‘Palaeobiology and Fossil Lagerst？tten: a tribute and memorial to Adolf Seilacher’’. Pal？ontologische Zeitschrift, 90:189.
9. Reitner J., Reich M., Yang Qun, Wang Yongdong, 2016. Preface: special issue ‘‘Palaeobiology and Fossil Lagerst？tten: a tribute and memorial to Adolf Seilacher’’. Pal？ontologische Zeitschrift, 90: 191-192.
10. Cao Y., Hao J.S., Sun X.Y., Zheng B., Yang Q.* 2016. Molecular phylogenetic and dating analysis of pierid butterfly species using complete mitochondrial genomes. Genetics and Molecular Research 15 (4): gmr15049196
11. Li Chunxiang, Lu Shugang, Ma Junye, Gai Yonghua,Yang Qun, 2016. Phylogeographic history of the woodwardioid ferns, including species from Himalaya, Palaeoworld, 25: 318-324.
12. Yang Qun, Yeh Kuei-yu. 2015. Radiolarian faunal transition in the Triassic-Jurassic boundary strata, Nadanhada Terrane, NE China. Radiolaria, 35 [Proceedings of 14th INTERRAD, March 22-26 2015, Antalya, Turkey], 161-162.
13. Sun Xiaoyan, Shao Lili, Peng Chaomin, Hao Jiasheng, Yang Qun, 2015. The complete mitochondrial genome of Eurema hecabe (Lepidoptera: Pieridae: Coliadinae). Mitochondrial DNA 26(5): 783–784. DOI: 10.3109/19401736.2013.855751
14. Shi Qing-Hui, Sun Xiao-Yan, Wang Yun-Liang, Hao Jia-Sheng*, Yang Qun*, 2015. Morphological characters are compatible with mitogenomic data in resolving the phylogeny of nymphalid butterflies (Lepidoptera:Papilionoidea:Nymphalidae). PLoSONE 10(4): e0124349. doi:10.1371/journal.pone.012434
15. Hao Juanjuan, Hao Jiasheng, Sun Xiaoyan, Zhang Lanlan, Yang Qun*. 2014. The complete mitochondrial genomes of the Fenton’s Wood White, Leptidea morsei and the Lemon Emigrant, Catopsilia pomona. Journal of Insect Science, 14(130) DOI: 10.1673/031.014.130.
16. Shao Lili, Huang Dunyuan, Sun Xiaoyan, Hao Jiasheng*, Cheng Chunhui, Zhang Wei, Yang Qun*. 2014. Complete mitochondrial genome sequence of the Cheirotonus jansoni (Coleoptera: Scarabaeoidae: Euchirinae). Genetics and Molecular Research, 13(1):1047~1058.
17. Sun Xiaoyan, Shao Lili, Peng Chaomin, Hao Jiasheng, Yang Qun, 2014. The complete mitochondrial genome of Eurema hecabe (Lepidoptera: Pieridae: Coliadinae). Mitochondrial DNA, doi: 10.3109/19401736.2013.855751
2009-2013
1. Reitner J, Yang Qun, Wang Yongdong and Reich M, (eds.) 2013. Palaeobiology and Geobiology of Fossil Lagerst？tten through Earth History. Universit？tsdrucke G？ttingen. 217 p.
2. Xia, X. and Q. Yang 2013. Cenancestor. In: S Maloy, K Hughes, editors. Encyclopedia of Genetics, 2nd edition: Elsevier (March 2013).
3. Sun XY, Yang Qun, Xia XH, 2013. An Improved Implementation of Effective Number of Codons (Nc). Molecular Biology and Evolution, 30(1):191-6.（Epub August 21, 2012）
4. Hao Jiasheng, Sun Min’ge, Shi Qinghui, Sun Xiaoyan, Shao Lili, Yang Qun. 2013. Complete Mitogenomes of Euploea mulciber (Nymphalidae: Danainae) and Libythea celtis (Nymphalidae: Libytheinae) and Their Phylogenetic Implications. ISRN Genomics, Volume 2013, Article ID 491636
5. Shi Qing-hui Shi, Zhao Fang, Hao Jia-sheng, Yang Qun, 2013. Complete mitochondrial genome of the Common Evening Brown, Melanitis leda Linnaeus (Lepidoptera: Nymphalidae: Satyrinae). Mitochondrial DNA, 2013; Early Online: 1–3
6. Zhang Lanlan, Huang Dunyun, Sun Xiaoyan, Hao Jiasheng, Hao Juanjuan, Peng Chaomin, Yang Qun, 2013. The complete mitochondrial genome of Cupido argiades (Lepidoptera: Lycaenidae). Mitochondrial DNA, 2013; Early Online: 1–3
7. Hao Juan-juan, Wang Yun-liang, Sun Xiao-yan, Zhang Lan-lan, Hao Jiasheng, Yang Qun, 2013. The complete mitochondrial genome of Hebomoia glaucippe (Lepidoptera: Pieridae). Mitochondrial DNA, 2013; Early Online: 1–3.
8. Zhao Fang, Huang Dun-Yuan, Sun Xiao-Yan, Shi Qing-Hui, Hao Jia-Sheng*, Zhang Lan-Lan, Yang Qun*. 2013. The first mitochondrial genome for the butterfly family Riodinidae(Abisara fylloides) and its systematic implications. Zoological Research, 34 (E4-5): E109-E119.
9. Gai Yonghua, Ma Huiqin, Sun Xiaoyan, Ma Junye, Yang Qun*, 2013. The complete mitochondrial genome of Cermatobius longicornis (Chilopoda: Lithobiomorpha: Henicopidae). Mitochondrial DNA, 24(4): 331–332.
10. Gai Yonghua, Ma Huiqin, Li Chunxiang, Yang Qun*. 2013. The complete mitochondrial genome of Scolopocryptops sp. (Chilopoda: Scolopendromorpha: Scolopocryptopidae). Mitochondrial DNA, 2013; Early Online: 1–2
11. Li Chunxiang and Yang Qun. 2013. Notes on the divergence time of the fern genus Asplenium from fossil and molecular evidence. Cretaceous Research, 45:352-355. [pdf]
12. Ma Junye, Li Chuxiang, Gai Yonghua, Yang Qun, 2013. The complete mitochondrial genome of Hyattella sinuosa (Dictyoceratida: Spongiidae). Mitochondrial DNA, 2013; Early Online: 1–2
13. Yang Qun, Yeh Kuei-yu, 2012. The Jurassic Leugeonidae: Systematics, distribution and stratigraphic range. Proceedings of 13th International Conference on Fossil and Recent Radiolarians (InterRad 13), Radiolaria Newsletter 28: 112-113.
14. 王玉净，罗辉，杨群，2012. 广西东南部钦防地区晚古生代放射虫化石。合肥：中国科技大学出版社，127页，22图版。（Late Paleozoic Radiolarians from the Qinfang Area, Southeast Guangxi. China Univ. Sci. Tech. Press, Hefei. 127 p., 22 pls.）
15. 孙晓燕，杨群*，2012。叶肢介颈器的超微形态特征及其演化意义。古生物学报 51（3）： 281－289。
16. Xia Xuhua, Yang Qun. 2012. Non-AUG initiation codon and downstream inframe AUG in Pyrococcus horikoshii: evaluating two hypotheses. Proceedings of 5th International Conference on Bioinformatics and Biomedical Engineering (iCBBE 2011). 4 printed pages. （EI）
17. Li Chunxiang, Lu Shugang, Ma Junye, Gai Yonghua, Barrington, DS, Yang Qun. 2012. From the Himalayan region or the Malay Archipelago: Molecular dating to trace the origin of a fern genus Phymatopteris (Polypodiaceae). Chinese Science Bulletin, 57 (35): 4569-4577.
18. Hao, J., Sun, Q., Zhao, H., Sun, X., Gai, Y., & Yang, Q*. (2012). The Complete Mitochondrial Genome of Ctenoptilum vasava (Lepidoptera: Hesperiidae: Pyrginae) and Its Phylogenetic Implication. Comparative and Functional Genomics, 2012, 1-13. doi:10.1155/2012/328049
19. Tian, L.-L., Sun, X.-Y., Chen, M., Gai, Y.-H., Hao, J.-S., & Yang, Q*. (2012). Complete mitochondrial genome of the Five-dot Sergeant Parathyma sulpitia (Nymphalidae: Limenitidinae) and its phylogenetic implications. Dong wu xue yan jiu = Zoological research / “Dong wu xue yan jiu” bian ji wei yuan hui bian ji, 33(2), 133-43. doi:10.3724/SP.J.1141.2012.02133
20. Shi Qinghui, Xia Jing, Sun Xiaoyan, Hao Jiasheng, Yang Qun*, 2012. Complete mitogenome of the Painted Jezebel, Delias hyparete Linnaeus (Lepidoptera: Pieridae) and its comparison with other butterfly species. Zoological Research, 33 (E5-6): E111-E120.
21. Yang Qun, Luo Hui, Wang Yujing, Aitchison, J., 2011. Radiolarians through time: Systematics, biostratigraphy and paleoceanographic significance. Palaeoworld, 20(2/3): 99-101
22. Wang Yujing, Yang Qun, 2011. Biostratigraphy, phylogeny and paleobiogeography of Carboniferous–Permian radiolarians in South China. Palaeoworld, 20(2/3): 134-145.
23. Xia Xuhua, Yang Qun. 2011. A Distance-based Least-square Method for Dating Speciation Events. Molecular Phylogenetics and Evolution. 59(2): 342-353.
24. 孙晓燕，夏旭华，杨群, 2011. 基于28S rDNA D1-D2基因片段与16S rDNA部分序列联合分析的叶肢介系统发育研究. 微体古生物学报. 28(4):370-380.
25. Li Chunxiang, Lu Shugang, Sun Xiaoyan, Yang Qun, 2011. Phylogenetic positions of the enigmatic Asiatic fern genera Diplaziopsis and Rhachidosorus from analyses of four plastid genes. American Fern Journal, 101 (3): 142-155.
26. 樊隽轩，张华，侯旭东，沈树忠，Wu Shuang-ye，杨群，王玥，罗辉，冷琴，张元动，詹仁斌，陈清，2011. 古生物学与地层学研究的定量化趋势—GBDB数字化科研平台的建设及其意义。古生物学报50（2），141-153.
27. Hao Jiasheng, Sun Xiaoyan, Shi Qinghui, Yang Qun. 2010. Phylogenetic position of Bryozoa among metazoan groups: evidence from near-complete LSU and SSU rRNA sequences. Acta Micropalaeontologica Sinica, 27(1): 1-12.
28. Li Chunxiang, Lu Shugang, Yang Qun, 2010. New insights for origin and evolution of fern genus Asplenium L. from fossil and molecular evidence. Journal of Fairylake Botanical Garden, 9(3): 14-16.
29. Xiao Shuhai, Yang Qun, Luo Zhexi, 2010. A Golden Age of Paleontology in China? A SWOT Analysis. Palaeontologia Electronica, Vol. 13, Issue 1; 3E:4p.
30 杨群，李春香，2010. “生命之树”的谱系年代研究. 科学，62（2）：5-7.
31. 杨群，周忠和，王向东，童金南，王永栋，2010. 中国古生物学的发展与展望。《古生物学学科发展报告》。中国科学技术出版社，3-30。
32. 杨群，赖旭龙，盛桂莲，李春香，2010. 分子古生物学。《古生物学学科发展报告》。中国科学技术出版社，140-148。
33. 李春香, 陆树刚, 马俊业, 杨群. 2010. 里白科植物的系统发育和分歧时间估计——基于叶绿体三个基因序列的证据. 古生物学报, 49 (1) : 64 – 72 [PHYLOGENY AND DIVERGENCE OF GLEICHENIACEAE INFERRED FROM THREE PLASTID GENES]
34. Cong Peiyun, Xia Xuhua, Yang Qun, 2009. Monophyly of the ring-forming group in Diplopoda (Myriapoda, Arthropoda) based on SSU and LSU ribosomal RNA sequences. Progress in Natural Sciences, 19: 1297-1303.
35. 杨群，丛培云，孙晓燕，马俊业，盖永华，李春香，郝家胜，夏旭华，2009. 谱系年代研究进展. 古生物学报，48(3): 364-374. [Yang Qun, Cong Pei-yun, Sun Xiao-yan, Ma Jun-ye, Gai Yong-hua, Li Chun-xiang, Hao Jia-sheng, Xia Xu-hua, 2009. Advances in phylogenetic chronology. Acta Palaeontologica Sinica, 48(3): 364-374]
（* 通讯作者）
1989-2008
1. YANG, Q. and E. A. PESSAGNO, JR., 1989. Upper Tithonian Vallupinae from the Taman Formation, east-central Mexico. Micropaleont., 35(2): 114-134.
2. PESSAGNO, E. A., JR., SIX, W. M., and YANG, Q., 1989. Xiphostylidae Haeckel and Parvivaccidae, n. fam., (Radiolaria) from the Jurassic of North America. Micropaleontology, 35 (3): 193-255.
3. YANG, Q. and WANG, Y. J., 1990. A taxonomic study of Upper Jurassic Radiolaria from Rutog County, Xizang (Tibet). Acta Micropalaeontologica Sinica, 7(3): 195-218.
4. YANG Q., 1991. Paleobiogeographic analysis of Jurassic Radiolaria. In: Jin, Y.-G., et al. (Eds.), Palaeoecology of China, Volume 1, pp. 233-248.
5. YANG, Q., and MIZUTANI, S., 1991. Radiolaria from the Nadanhada Terrane, NE China. Journal of Earth Sciences, Nagoya University, 38: 49-78.
6. 王玉净、杨群，1991. 西藏日土县晚侏罗世放射虫。《西藏日土地区二叠纪、侏罗纪、白垩纪地层及古生物》(孙东立、徐均涛等)，88-100，南京大学出版社。
7. YANG, Q. and LI, R.-Y., 1992. Paleontological data management -- strategies for programming taxonomic description. Annual reports of CAD Laboratory, Institute of Computing Technology, Academia Sinica 1991: 263-270.
8. 杨 群、王玉净、刘荣芝，1992. 黑龙江省那丹哈达地体中的 T/J 界线地层. 科学通报, 1992(6): 547-549.
9. 杨 群、李荣玉, 1992. 古生物分类数据的管理策略. 《江苏省首届青年学术年会论文集》(理科分册), 304-308页. 中国科学技术出版社.
10. WANG, Y.-J. and YANG, Q., 1992. Neogene and Quaternary Radiolaia from ODP Leg 125. Proc. ODP, Sci. Results, 125:95-112.
11. 杨 群, 1993. Biostratigraphy of the Nadanhada terrane, NE China. 中国博士后首届学术大会论文集, 1985-1988.
12. Yang Qun, 1993. Taxonomic studies of Upper Jurassic (Tithonian) Radiolaria from the Taman Formation, east-central Mexico. Palaeoworld No. 3 (专刊). 164 页, 35 插图, 26 图版.
13. 杨 群, 1993. 微体古生态学. 地球科学进展, 8 卷 3 期, 84-85 页.
14. Yang Qun, Mizutani, S. and Nagai, H. 1993. Biostratigraphic correlation between the Nadanhada terrane, northeast China, and the Mino terrane, central Japan. Jour. Earth Sci., Nagoya Univ., vol. 40, 27-43.
15. Yang Qun, 1993. Radiolarian assemblages from T/J boundary strata in the Nadanhada Terrane, northeast China. Palaeoworld, 2, 270-294.
16. 杨 群, 1993. 放射虫化石的化学分离方法. Palaeoworld, 2, 18-24.
17. Wang Yujing, Cheng Yennien and Yang Qun. 1994. Biostratigraphy and systematics of Permian radiolarians in China. In: Jin Y, Utting J and Wardlaw B R, Eds, Permian Stratigraphy, Environments and Resources, Volume 1: Palaeontology & Stratigraphy, pp. 172-202.
18. YANG QUN, 1995. Middle Jurassic (Bajocian) Radiolaria from the Snowshoe Formation, east-central Oregon (USA) and the OFFICERENSE Zone worldwide. Bull. Natl. Mus. Natur. Sci., No. 6: 55-89.
19. 杨 群、尚庆华，1995. 分子古生物学进展: 化石DNA的研究。Palaeowold，6，78-81。
20. 杨 群，1995，古生物学领域的新辟园地 - 分子古生物研究。古生物学报，34卷3期，265-276。
21. 杨 群，1995. 那丹哈达地体的放射虫研究。《中国东北地体与东北亚大陆边缘演化》(邵济安等)，115－133页，地震出版社。
22. 程延年，杨 群，王玉净，叶贵玉，1995. 亚洲东部放射虫地层的对比研究 (课题报告). Palaeoworld, 6: 84-86.
23. 周祖仁、杨 群、盛金章、李星学、徐永昌，1995：地质时期生物与自然协调演化及化石燃料资源的分布规律。地球科学进展，10（4）：378-382。
24. 杨群、周建平、杨洪，1997. 分子系统学在微体古生物及相关领域中的应用。微体古生物学报，14(4):489-499。
25. Yang Qun and Matsuoka, A., 1997. A comparative study on radiolarian biostratigraphy of the Taman Formation, east-central Mexico, and an Upper Jurassic/Lower Cretaceous section at ODP 801, west Pacific. Science Reports of Niigata University, Ser. E, No. 12:29-49.
26. 杨晓松、薛重生、张克信、曾志平、樊光明、李昌年、尹磊明、杨 群，1997. 赣东北浅变质岩系中的微体古生物化石。科学通报，42(4):409-412.
27. 周祖仁、杨 群、盛金章，1997. 假希瓦格蜓属（Pseudoschwagerina）和球希瓦格 蜓属（Sphaeroschwagerina）。微体古生物学报，14(2): 111-128。
28. Yang Qun, Wu Ping and Li Chunxiang, 1998. Synthetic studies of genetic information and fossil data. Proceedings of XVIIIth International Congress of Genetics Kunming Satelite Conference, p.107-8.
29. 吴平、周开亚、杨 群，1998. 用12S rRNA基因序列研究潮龟科（Bataguridae）闭壳龟类的进化。应用与环境生物学报，4（4）：374-378。
30. 杨洪、程安进、杨 群，1998. 地质体中的主要生物分子：研究范畴与方法。地质论评, 44（1）：44-51。
31. Matsuoka A, Yang Q, Kobayashi K, Nagahashi T, Zeng Q, Wang Y. 1998. Radiolarian age of siliceous rocks in the Yarlung Zangbo Suture Zone, Xizang (Tibet), China and its bearing on tectonic development. Proceedings of the Symposium on Tectonic Research, Kyoto.
32. 李春香、杨 群、周建平、范深厚、杨洪，1999. 水杉自然居群遗传多样性的RAPD研究。中山大学学报（自然科学），38（1）：59-63.
33. 刘德明，周建平，杨 群，1999. 浙江长兴二叠系-三叠系界线地层中的氨基酸. 古生物学报,38(1):86-93.
34. Yang Qun, William R. Gower Jr., Li Chunxiang, Chen Peiji and David L. Vesely. 1999. Atrial Natriuretic Peptide and its Prohormone within Metasequoia. The Proceedings of the Society for Experimental Biology and Medicine, 221: 188-192.
35. Li Chunxiang, Cheng Anjin and Yang Qun, 1999. A preliminary study on DNA survival curves under simulated sedimentary envrionment. Palaeoworld, 12: 1-12.
36. Yang Qun, Ozawa T, Hayashi S and Wang Bo, 1999. Extraction, PCR amplification and cloning of aDNA from human remains of the Warring States (475-221 B.C.). Palaeoworld, 12: 13-24.
37. Wu Ping, Cheng Anjin, Li Qingwei, Liu Jin-yuan and Yang Qun, 1999. Identification of contaminating elements in ancient DNA research. Palaeoworld, 12: 25-34.
38. Liu Demin, Cao Changqun and Yang Qun, 1999. Trace analysis of amino acids in Permian/Triassic boundary sediments by electron captures gas chromatography. Palaeoworld, 12: 35-50.
39. Nagai H, Yang Qun and Wang Yujing, 1999. New radiolarian morphotype discovered from the Dalong Formation, Hushan, east suburb of Nanjing. Palaeoworld, 12: 85-93.
40. 吴平，周开亚，杨 群. 1999. 亚洲产龟类12S rRNA 基因片段的序列分析和系统发生研究。动物学报，45(3): 260-267。
41. 吴平, 程安进, 杨 群, 周开亚, 1999. 线粒体DNA在龟鳖目中的进化速度与古生物分化事件。自然科学进展，9(12): 1119-1125.
42. Yang Qun, Matsuoka A, Wang Yujing, Kobayashi K, Nagahashi T and Zeng Qinggao, 2000. A Middle Triassic radiolarian assemblage from Quxia, Lhaze County, southern Tibet. Science Report (Geology), Niigata Univ., Ser E, 15: 1-7.
43. Lü Baozhong, Yang Qun, Jian Wang and Pan I-hung, 2000. Hemerythrin and its significance on nonlinear evolution. Journal of Genetics and Molecular Biology. 11(1): 23-28。
44. 吴平，张克云，杨 群，2000. 18S rRNA基因在节肢动物系统进化研究中的意义。现代地质，14（3）：355-362。
45. 吴平，张克云，杨 群，2000. 后生动物起源时间的分子钟研究。古生物学报，39（3）：449-453。
46. Matsuoka A and Yang Qun, 2000. A direct correlation between North American and Japan-Pacific radiolarian zonal scheme for the Upper Jurassic. GeoResearch Forum, 6: 119-128.
47. 王玉净、方宗杰、杨 群、周志澄、程延年、段彦学、肖荫文云，2000. 南西部中—晚泥盆世硅质岩相地层及其放射虫动物群。微体古生物学报，17（3）： 235-254. (Middle-Late Devonian Strata of Cherty Facies and Radiolarian Faunas from West Yunnan)
48. 周建平,张遴信,王玉净,杨 群. 2000. 中国二叠纪类生物地理分区.地层学杂志, 24(增刊):378～381 [Zhou Jianping, Zhang Linxin, Wang Yujing, Yangqun. Permian biogeography provinces of fusulinids in China. Journal of Stratigraphy, 2000, (Supplement): 378-381]
49. Yang Qun and Lü Baozhong, 2001. Molecular respiratory mechanisms in the Cambrian metazoans. Journal of Genetics and Molecular Biology, 12(1): 10-11.
50. Matsuoka A, Qun Yang, Kobayashi K, Nagahashi T, Takei M, Qinggao Zeng and Yujing Wang, 2001. Siliceous deposits in the Yarlung-Zangbo Suture Zone, southern Tibet, China: paleoceanographiy in the east Tethys. Topics in Paleontology, 2: 39-44.
51. Matsuoka A, Kobayashi K, Nagahashi T, Qun Yang, Yujing Wang and Qinggao Zeng. 2001. Early Middle Jurassic (Aalenian) radiolarian fauna from the Xialu chert in the Yarlung Zangbo suture zone, southern Tibet. In: I Metcalfe et al, eds, Faunal and Floral Migrations and Evolution in SE Asia-Australasia, pp.105-110. Blackema Publishers, Lisse.
52. Leng Qin, Yang Hong, Yang Qun and Zhou Jianping, 2001. Variation of cuticle micromorphology of Metasequoia glyptostroboides (Taxodiaceae). Botanical Journal of the Linnean Society, 136: 207-219.
53. Lü Baozhong, Yang Qun and I-Hung Pang, 2001. Divergent Evolution of hemerythrin superfamily and its functional implications. Journal of Genetics and Molecular Biology, 12(3): 145-150.
54. 郝家胜，夏凤生，杨 群，2001. 苔藓动物的起源与系统发生。微体古生物学报，18(4): 385-391.
55. Lü Baozhong, Yang Qun, 2001. Study on erythrocuorin using proteome analysis. Journal of Genetics and Molecular Biology, 12(4): 210-211.
56. Matsuoka A, Yang Qun, Kobayashi K, Takei M., Nagahashi T, Zeng. Qinggao and Wang Yujing 2002. Jurassic-Cretaceous radiolarian biostratigraphy and sedimentary environments of the Ceno-Tethys: records from the Xialu Chert in the Yarlung-Zangbo Zone, southern Tibet. Jour. Asian Ear. Sci., 20: 277-287.
57. Yang Qun, Matsuoka A. and Wang Yujing, 2002. Advance in radiolarian micropaleontololgical studies in southern Tibet. Acta Micropalaeontological Sinica, 19(2): 105-111. (西藏南部放射虫微体古生物研究进展)
58. Lu Baozhong, Yang Qun, Zhong Yang and Pan I-Hung, 2002. Using Proteome analysis databases for molecular phylogeny. Journal of Genetics and Molecular Biology, 13(2): 124-131.
59. Lu Baozhong, Yang Qun, and Pan I-Hung, 2002. Evolutionary inference for globin superfamily. Journal of Genetics and Molecular Biology, 13(4): 258-263.
60. Wang Yujing, Yang Qun, Matsuoka A, Kobayashi K, Nagahashi T and Zeng Qinggao, 2002. Triassic radiolarians from the Yarlung-Zangbo Suture Zone in Jinlu area, Zetang County, southern Tibet. Acta Micropalaeontological Sinica, 19（3）：215-227。(西藏南部泽当县雅鲁藏布缝合带中的三叠纪放射虫)
61. Li Chunxiang and Yang Qun, 2002. Divergence time estimates for major lineages of Cupressaceae (s.l.). Acta Phytotaxonomica Sinica, 40(4): 323-333. (广义柏科主要分类群起源时间得推测。植物分类学报)
62. Li Chunxiang and Yang Qun, 2002. Polymorphism of ITS sequences of nuclear ribosomal DNA in Metasequoia glyptostroboides. Journal of Genetics and Molecular Biology, 13(4): 264-271.
63. 郝家胜，杨 群，李春香，张克云，孙晓燕，2002。苔藓动物18S rRNA基因的分子系统发育初探。微体古生物学报，19（2）：199-205。
64. 郝家胜 杨 群. (2002). 拟迷误裂孔苔虫18SrDNA的序列测定及系统学分析(262) (THE 18S rDNA SEQUENCING AND PHYLOGENETIC ANALYSIS OF SCHIZOPORELLA ERRATOIDEA). 安徽师范大学学报（自然科学版）JOURNAL OF ANHUI NORMAL UNIVERSITY（NATURAL SCIENCE）2002 Vol.25 No.3: 262-265
65. 李春香、杨 群，2002. 杉科、柏科的系统发生关系研究进展。生命科学研究，6（1）：56-60。
66. 李春香、杨 群，2002. PCR 产物直接测序还是克隆测序？-- 密叶杉属rDNA ITS 序列的测定方法。植物学通报，19(6)：698～704
67. Yang Qun, Sun Xiaoyan, Zhang Keyun, Wu Ping, 2003. Arthropod phylogenetic chronology. Journal of Genetics and Molecular Biology, 14(3):145～158
68. Hao Jiasheng, Yang Qun, et al., 2003. Molecular phylogeny of lophotrochozoa based on 18S rRNA gene sequences – with comment on the phylogenetic position of Bryozoa. Journal of Genetics and Molecular Biology, 14(2): 64-72
69. Lu Baozhong, Yang Qun and Pan I-Hung, 2003. Integrated phylogenetic relationship between Gastrapoda and Cephalopoda. Journal of Genetics and Molecular Biology, 14(1): 19-23
70. Zhang Keyun, Sun Xiaoyan, Yang Qun, 2003. Molecular Phylogeny of Ostracoda Based on 18S and 28S rDNA Sequence data. Journal of Genetics and Molecular Biology, 14(4): 224-232
71. Li Gang and Yang Qun, 2003. Discovery of Early Cretaceous radiolarians from the Longzhaogou Group in eastern Heilongjiang Province. Cretaceous Research, 24(6): 691~696
72. 李春香，杨 群，2003. 杉科、柏科的系统发生分析—来自28S rDNA序列分析的证据。遗传，25(2): 177～180
73. 王玉净、杨 群，2003. 广东韶关仁化地区中二叠世孤峰组的放射虫动物群。微体古生物学报，20（4）：333～341
74. 王玥、杨 群，2003. 化石记录的再评估。古生物学报，42(2)：297～302
75. 张克云、孙晓艳、杨 群, 2003. 介形纲丽足目和速足目及相关类群18S rDNA分子系统发育的研究. 古生物学报, 42 (3): 452～459
76. 张克云, 郝家胜，杨 群, 2003. 介形类系统分类与起源演化的形态、分子和化石证据. 微体古生物学报, 20 (3):
77. 吕宝忠、杨 群，2003. 血蓝蛋白分子的结构、分类及其在进化上的演变。自然杂志，25（3）：180～183。
78. 李春香，陆树刚，杨 群，2004. 蕨类植物起源与系统发生关系研究进展。植物学通报，21(4):478-485
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