周志炎，杨小菊，吴向午，2020. 中国古植物志-银杏植物。北京：科学出版社，458 pp.
Yang X-J，Xu Q，Lin M-Q，Li J-G，2019. Plant remains from Lower Cretaceous deposits of Qubsang，Doilungdeqen，northwestern Lhasa of Tibet，China. Journal of Asian Earth Sciences Journal of Asian Earth Sciences 175:83-92（SCI）
Guignard G，Yang X-J*，Wang Y-D，2019. Cuticle ultrastructure of Baiera furcata from Northeast China and its implication in taxonomy and paleoenviroment. Review of Palaeobotany and Palynology 268:95-108 (SCI)
Xu Q，Yang X.J.*，2019. Preliminary study of flora from the late Early Cretaceous Dalazi Formation in Luozigou Basin，Wangqing，Jilin Province，Northeast China. Open Journal of Geology 9: 581-584
Yang X-J，Guignard G.，Zhou Z-Y，Xu Q， 2018. Suturovagina intermedia (Cheirolepidiaceae) from the Lower Cretaceous Dalazi Formation of Wangqing，Northeast China: cuticle ultrastructure and palaeoenvironmental insights. Cretaceous Research 91：80-99 (SCI)
徐青，杨小菊*，2018.吉林汪清早白垩世似卷柏化石. 古生物学报 57（1）：95-104
Dong C，Wang Y-D，Yang X-J，Sun B-N，2018. Whole-plant reconstruction and updated Phylogeny of Austrohamia acanthobractea (Cupressaceae) from the Middle Jurassic of Northeast China. Int. J. Plant Sci. 179(8):640–662 (SCI)
Guignard G，Yang X-J*，Wang Y-D，2017. Cuticle ultrastructure of Pseudofrenelopsis gansuensis: Further taxonomical implications for Cheirolepidiaceae. Cretaceous Research 71: 24- 39 (SCI)
邓胜徽，卢远征，赵怡，樊茹，王永栋，杨小菊，李鑫，孙柏年，2017. 中国侏罗纪古气候分区与演变. 地学前缘 24 （1）：106-141
杨小菊，李建国，2016。西藏拉萨早白垩世种子蕨一新种，古生物学报，55（4）：467-472
董重，杨小菊，周之炎2016植物化石. 见：黄迪颖主编，道虎沟生物群上海：科技出版社（中文论著）页252-302
Yang Xiao-Ju，2015. Anatomaical structures of fossil wood. In: Shenyang Center of Geological Survey，China Geological Survey and Shenzhen Fairy Lake Botanical Garden Eds. An introduction to the World’s petrified wood. Beijing，Geological Publishing House，10-12.
Yang Xiao-Ju，Yi Tie-mei，Li Nan，2015. Fossil wood from Africa. In: Shenyang Center of Geological Survey，China Geological Survey and Shenzhen Fairy Lake Botanical Garden Eds. An introduction to the World’s petrified wood. Beijing，Geological Publishing House，393-444.
Caroline Mairot，Ga？tan Guignard，Yang Xiao-Ju *(通讯作者)，Zhou Zhi-Yan，2014. Cuticle micro- and ultrastructure of Suturovagina Chow et Tsao (Cheirolepidiaceae): taxonomic and palaeoecological implications. Review of Palaeobotany and Palynology 205: 9–21 (SCI)
Yang Xiao-ju，Wu Xiang –wu，Zhou Zhi-yan，2014. On the nomenclatural problems of some Chinese ginkgoalean fossil plants. Acta Palaeontologica Sinica，53（3）: 263-273
Wang Yongdong，Wu Xiangwu，Yang Xiaoju，Duan Wei，Li Liqin. 2014. The discovery of Jurassic plants in Shenzhen of Guangdong，southern China and related significance. Chin. Sci. Bull.，59: 3630-3637
Yang Xiao-Ju，Wang Yong-Dong，Zhang Wu，2013. Occurrences of Early Cretaceous fossil woods in China:Implications for paleoclimates. Palaeogeography，Palaeoclimatology，Palaeoecology 385:213–220 (SCI)
Zhang W，Yang X-J*(通讯作者)，Fu X-P，Zheng S-L，Wang Y-D，2012. A polyxylic Cycad trunk from the Middle Jurassic of western Liaoning，China，and its evolutionary implications. Review of Palaeobotany and Palynology 183: 50–60(SCI)
Hill C R，Yang X-J，Zhou Z-Y，Doyle J，2012. Exceptionally preserved conifer twigs of Pseudofrenelopsis from the marine Lower Cretaceous of Yorkshire，England. Acta Palaeontologica Sinica，51:395-410
吴向午，杨小菊，2011. 河南义马中侏罗世义马组一新的苔类植物－Sinolejeunea yimaensis gen. et sp. nov. 中国科学 D. 41:1596-1601
Yang X-J，Wu X-W，2011. Sinolejeunea yimaensis gen. et sp. nov. (Hepaticae) from the Middle JurassicYima Formation，Henan，China. Science China: Earth Sciences，54: 228-232 (SCI)
杨小菊，张武，郑少林，2010辽西侏罗纪一块有营养羽片、生殖羽片和原位孢子的紫萁根茎化石 科学通报 55 (32): 3158-3161 （封面文章）
Yang X-J，Zhang W，Zheng S-L，2010. An Osmundaceous rhizome with sterile and fertile fronds and in situ spores from the Jurassic of western Liaoning. Chinese Science Bulletin 55 (34): 3864-3867 (SCI)（cover paper）
Yang X-J，Guignard G，Thevenard F，Wang Y-D，Barale G，2009. Leaf cuticle ultrastructure of Pseudofrenelopsis dalatzensis (Chow et Tsao) Cao ex Zhou (Cheirolepidiaceae) from the Lower Cretaceous Dalazi Formation of Jilin，China. Review of Palaeobotany and Palynology 153: 8-18 (SCI)
Wang YD，Yang X J，Guignard G.，Deng S H，Tian N，Jiang Z K，2009. The fossil Gleicheniaceous ferns of China: Biodiversity，systematics，spore ultrastructure and evolution. Review of Palaeobotany and Palynology 156: 139-156 (SCI)
Wang Y D，Yang X J，Zhang W，Zheng S L，Tian N，2009. Biodiversity and palaeoclimatic implications of fossil woods from the non-marine Jurassic of China. Episodes，32: 13-20 (SCI)
Yang X-J，E M Friis，Z-Y Zhou，2008. Ovule-bearing organs of Ginkgo ginkgoidea (Tralau) comb. nov.，and associated leaves from the Middle Jurassic of Scania，South Sweden. Review of Palaeobotany and Palynology 149: 1-17 (SCI)
Yang X-J，2008. A male cone of Pseudofrenelopsis dalatzensis with in situ pollen grains from the Lower Cretaceous of Northeast China. Geobios，41: 689-698 (SCI)
Yang X-J，Li Y，Wang Y-D，2008 Cretaceous fossil woods. In: Fossil wood of China. China Forestry Publishing house. pp. 175-242
Wang Y-D，Li Y，Yang X-J，Zhang W，2008. Jurassic fossil woods In: Fossil wood of China. China Forestry Publishing house. pp.120-174
Zheng S-L，Wang Y-D，Yang X-J，Yi T-M，2008. Chinese fossil woods and their palaeogeography and palaeoclimate. In: Fossil wood of China. China Forestry Publishing house. pp. 319-335
Tian N，Wang Y-D，Yang X-J，Ni Q，Jiang Z-K，2008. Preliminary study on Late Triassic to Early Jurassic strata and floral variation in Hechuan region of Chongqing，southern Sichuan Basin. Global Geology 11（3）：125-129
Yang X J，Li W B，Batten D J.，2007. Biostratigraphic and palaeoenvironmental implications of an Early Cretaceous miospore assemblage from the Muling Formation，Jixi Basin，northeast China. Cretaceous Research 28:339-347(SCI)
Yang X-J，Deng S-H，2007. Discovery of Pseudofrenelopsis gansuensis from the Lower Cretaceous of Wangqing，Jilin Province，and Its Significance in Correlation of Cretaceous Red Beds in China. Acta Geologica Sinica，81 (6): 905–911 (SCI)
Zhang W，Wang Y-D，Zheng S-L，Yang X-J，Li Y，Fu X-P，Li N. Taxonomic investigations on permineralized conifer woods from the Late Paleozoic Angaran deposits of northeastern Inner Mongolia，China and their palaeoclimatic significance. Review of Palaeobotany and Palynology 144: 261-285(SCI)
刘秀英，杨小菊，周志炎，2007。西藏东部晚中生代植物。北京：地质出版社。1-123
周志炎，杨小菊，2007. 银杏类的起源、演化和分类. 见：曹福亮（主编）中国银杏志，第二章. 北京: 中国林业出版社，14-27页。Zhou Z-Y，Yang X-J，2007. Origin，evolution and classification of Ginkgoaleans. In: Cao，F.L. (Chief Ed.) A monograph of Chinese ginkgos，Chapter 2. Beijing: China Forestry Publishing House，14-27 (in Chinese)
杨小菊，2007。瑞典国家自然历史博物馆。生物进化，1:58－61
Yang X-J，Deng S-H，Li W-B，2006. Discovery of cheirolepidiaceous conifers in the Early Jurassic Sangonghe Formation of Junggar Basin，northern Xinjiang and the palaeoclimatic implications. Progress in Natural Sciences: 16: 231-235 (SCI)
Wu XW，Yang X-J，Zhou Z Y，2006. Ginkgoalean ovulate organs and seeds associated with Baiera furcata-type leaves from the Middle Jurassic of Qinghai Province，China. Review of Palaeobotany and Palynology 138: 209-225 (SCI)
张武，李楠，杨小菊，王永栋，傅小平，李勇，郑少林，2006 内蒙古早三叠世的Scalaroxylon及其演化意义 古生物学报，45: 339-349
杨小菊，李勇，王永栋，2006. 白垩纪木化石。见：张武，李勇，郑少林等 主编,《中国木化石》。175－239页。北京：中国林业出版社。
王永栋，李楠，杨小菊，张武，2006. 侏罗纪木化石。见：张武，李勇，郑少林等 主编，《中国木化石》。120－174页。北京：中国林业出版社。
郑少林，王永栋，杨小菊，依铁梅，2006. 中国木化石与古地理和古气候。见：张武，李勇，郑少林等 主编，《中国木化石》。319-333页。北京：中国林业出版社。
王永栋，杨小菊，2006. 硅化木地质公园－探究地质时期植被与气候变化的窗口。世界地质公园通讯，3: 38-40
杨小菊，2005. 青海化隆早白垩世河口群一种掌鳞杉科（松柏类）植物化石表皮角质层的扫描电镜观察. 古生物学报，44(1):79-86
Wang Y D，Guignard G，Thévenard F，Dilcher D，Barale G，Mosbrugger V，Yang X J，Mei S W，2005. Cuticular anatomy of Sphenobaiera huangii (Ginkgoales) from the Lower Jurassic of Hubei，China. American Journal of Botany，92(4): 709 -721. (SCI)
Deng S-H，Yang X-J，Lu Y-Z，2005. Pseudofrenelopsis (Cheirolepidiaceae) from the Lower Cretaceous of Jiuquan，Gansu，Northwestern China Acta Palaeontologica Sinica，44(4): 505-516
Yang X-J，2004. Ginkgoites myrioneurus sp. nov. and its associated shoots from the Lower Cretaceous of the Jixi Basin，Heilongjiang，China. Cretaceous Research，25(5):739-748 (SCI)
Deng S H，Yang X-J，Zhou Z Y，2004. An Early Cretaceous Ginkgo ovule-bearing organ fossil from Liaoning，Northeast China and its evolutionary implications. Chinese Science Bulletin，49: 1774-1776 (SCI)
邓胜徽，杨小菊，周志炎，2004. 辽宁铁法盆地早白垩世银杏胚珠器官的发现及其意义. 科学通报，49(13):1334-1336
杨小菊，何承全，黎文本，朴太元，2003. 鸡西盆地早白垩世穆棱组海相沟鞭藻的发现及其古环境意义. 科学通报，48(14): 1553-1556.
Yang X-J，2003. New material of fossil plants from the Early Cretaceous Muling Formation of the Jixi Basin，eastern Heilongjiang Province，China. Acta Palaeontologica Sinica，42 (4): 561-584
Yang X-J，Zheng S-L，2003. A new species of Taxodioxylon from the Lower Cretaceous of the Jixi Basin，eastern Heilongjiang，China. Cretaceous Research，24(6): 653-660 (SCI)
Yang X J，He C Q，Li WB，Piao T Y，2003. Marine dinoflagellates from the Lower Cretaceous Muling Formation of Jixi Basin，China and their palaeoenvironmental significance. Chinese Science Bulletin，48 (22): 2480-2483 (SCI)
